rewrite to abolute paths

instructions/countings_formater.py

@@ -19,6 +19,7 @@ EXPECTED_OUTPUT_TABLE_SCHEMA.remove("Geschlecht")
 COL_INSTRUCTIONS = {
     ("Art",): {
         "command": "FIND_AND_REPLACE",
+        "reqire_full_match": True,
         "map": SPICIES
     },
     ("Ort",): {

instructions/ring_formater.py

@@ -23,11 +23,13 @@ COL_INSTRUCTIONS = {
     ("Geschlecht",): [
     {
         "command": "FIND_AND_REPLACE",
-        "map": REPRODUCTION
+        "map": REPRODUCTION,
+        "reqire_full_match": True
     },
     {
         "command": "FIND_AND_REPLACE",
-        "map": AGE
+        "map": AGE,
+        "reqire_full_match": True
     },
     {
         "command": "REGEX_MOVE_TO_COL",

run.sh

@@ -2,6 +2,25 @@
 
 SCRIPT_DIR="$HOME/.config/fledermaus-formatter"
 
+to_absolute_args() {
+  local result=()
+
+  for arg in "$@"; do
+    if [ -e "$arg" ] || [ -d "$arg" ] || [ -f "$arg" ]; then
+      result+=("$(realpath "$arg")")
+    else
+      result+=("$arg")
+    fi
+  done
+
+  printf '%s\n' "${result[@]}"
+}
+
+ABS_ARGS=()
+while IFS= read -r line; do
+  ABS_ARGS+=("$line")
+done < <(to_absolute_args "$@")
+
 cd $SCRIPT_DIR
 source $SCRIPT_DIR/.venv/bin/activate
-$SCRIPT_DIR/.venv/bin/python3 __init__.py $@
+$SCRIPT_DIR/.venv/bin/python3 __init__.py "${ABS_ARGS[@]}"

table_handler/commands/find_and_replace.py

@@ -2,13 +2,18 @@ import re
 from copy import deepcopy
 
 class FindAndReplace:
-    def __init__(self, map: dict[str, list[str]]):
+    def __init__(self, map: dict[str, list[str]], reqire_full_match: bool = False):
         self.map = map
+        self.require_full_match = reqire_full_match
 
     def execute_on_cell(self, entry) -> str:
         res = deepcopy(entry.value)
 
         for species, alternatives in self.map.items():
             for old_version in alternatives:
-                res = res.replace(old_version, species)
+                if self.require_full_match and old_version == res:
+                    # Todo remove random leading/trailing spaces before if
+                    res = species
+                else:
+                    res = res.replace(old_version, species)
         return res

table_handler/serializer.py

@@ -109,7 +109,7 @@ class TableSerializer:
         res_row = {}
         match instruct.get("command"):
             case "FIND_AND_REPLACE":
-                res = FindAndReplace(instruct["map"]).execute_on_cell(row[source_cell])
+                res = FindAndReplace(instruct["map"], instruct.get("reqire_full_match", False)).execute_on_cell(row[source_cell])
             case "REGEX_MOVE_TO_COL":
                 res_row = RegexMoveToCol(instruct["match"], instruct["to"], instruct.get("with_input_iteration")) \
                     .execute_on_row(row, source_cell)